A reverse-introgression and genomics strategy to develop and characterize chickpea germplasm for yield and climate-resilience traits

Posted on 06.02.2017 | Last Modified 07.05.2019
Lead Researcher (PI): Bunyamin Taran
Institution: University of Saskatchewan
Total WGRF Funding: $188,611
Co-Funders: Agriculture Development Fund, Saskatchewan Pulse Growers
Start Date: 2014
Project Length: 3 Years

Introduce wild diversity into phenology-normalized backgrounds suitable to western Canadian environment so that it is amenable for trait assessment and use in breeding for western Canada; characterize the material by systematic phenotyping under western Canadian environment, and develop a predictive network of genotype-phenotype associations that explicitly identifies and quantifies the contributions of agronomically useful alleles

Project Summary:

Chickpea is well known to have narrow genetic base, consequently, limits our ability to expand the cultivation of the crop into new environments such as western Canada, and limits our breeding effort to improve stress tolerance as well as other economically important traits. Wild species of chickpea are important but underutilized resource for crop improvement. Exploitation of chickpea wild relatives offers opportunities for identifying genetic variations for simple as well as for more complex traits. The research addressesed three main objectives: 1) introduce wild diversity into phenology-normalized backgrounds suitable to western Canadian environment so that it is suitable for trait assessment and use in breeding, 2) characterize the materials by systematic phenotyping under western Canadian environment, and 3) develop genotype-phenotype associations. This research is part of a larger research coordinated by UC Davis, USA involving partners from other universities and research institutions in USA, Turkey, Australia, India and Ethiopia. The research at CDC started with the development of 40 F2 populations from crosses between elite cultivars (CDC Leader and CDC Consul) with each of the 20 accessions of the newly collected Cicer reticulatum. The F2 populations derived from crossing with CDC Leader were screened for cultivated alleles for early flowering and upright growth habit. This selection normalized the phenology of the progeny for flowering time and growth habit characteristics of cultivars. The most diverse F2 plants within each of 20 populations that have fixed flowering and growth habit for the cultivated type were selected and intercrossed (intra-population) to create diverse progeny lines. A total of 600 F5’ diverse families were selected and characterized for important agronomic and nutritional traits under field conditions in 2017. We also developed unselected F2 populations for studying the genetics of micronutrients accumulation in seeds, and developed some additional lines from intercrossing the F2 plants across different populations (inter-populations) creating a wealth of genetic resources for breeding application. We have completed systematic evaluation of the parental lines and their progeny for a series of agronomic and nutritional quality and identified accessions of the C. reticulatum and their progeny with better cold tolerance than the cultivated lines as well as high iron and other nutrient content in the seeds. High throughput genotyping using 50K Axiom® Cicer SNP chip has identified loci associated with the important traits in the genetic stock. The diverse genetic materials and the information on SNP-trait associations are invaluable for selection for continuing genetic improvement in the chickpea breeding program at CDC. To date the project partners simultaneously screened the accessions for other traits such as drought tolerance, root architecture and heat tolerance, interaction with Rhizobium and N fixation, and reaction to root rot and other diseases. All the data will be shared among the members of the project partners allowing us to use such information to select our materials.